flowBin

Combining multitube flow cytometry data by binning

Bioconductor version: Release (3.19)

Software to combine flow cytometry data that has been multiplexed into multiple tubes with common markers between them, by establishing common bins across tubes in terms of the common markers, then determining expression within each tube for each bin in terms of the tube-specific markers.

Author: Kieran O'Neill

Maintainer: Kieran O'Neill <koneill at bccrc.ca>

Citation (from within R, enter citation("flowBin")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowBin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowBin")

flowBin	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version	1.40.0
In Bioconductor since	BioC 2.14 (R-3.1) (10.5 years)
License	Artistic-2.0
Depends	methods, flowCore, flowFP, R (>= 2.10)
Imports	class, limma, snow, BiocGenerics
System Requirements
URL

Suggests	parallel
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowBin_1.40.0.tar.gz
Windows Binary (x86_64)	flowBin_1.40.0.zip
macOS Binary (x86_64)	flowBin_1.40.0.tgz
macOS Binary (arm64)	flowBin_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowBin
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowBin
Bioc Package Browser	https://code.bioconductor.org/browse/flowBin/
Package Short Url	https://bioconductor.org/packages/flowBin/
Package Downloads Report	Download Stats