drawProteins
Package to Draw Protein Schematics from Uniprot API output
Bioconductor version: Release (3.19)
This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.
Author: Paul Brennan [aut, cre]
Maintainer: Paul Brennan <brennanpincardiff at gmail.com>
Citation (from within R, enter
citation("drawProteins")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("drawProteins")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("drawProteins")| Using drawProteins | HTML | R Script |
| Using extract_transcripts in drawProteins | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | FunctionalPrediction, Proteomics, Software, Visualization |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0) |
| Imports | ggplot2, httr, dplyr, readr, tidyr |
| System Requirements | |
| URL | https://github.com/brennanpincardiff/drawProteins |
| Bug Reports | https://github.com/brennanpincardiff/drawProteins/issues/new |
See More
| Suggests | covr, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | factR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | drawProteins_1.24.0.tar.gz |
| Windows Binary (x86_64) | drawProteins_1.24.0.zip |
| macOS Binary (x86_64) | drawProteins_1.24.0.tgz |
| macOS Binary (arm64) | drawProteins_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/drawProteins |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/drawProteins |
| Bioc Package Browser | https://code.bioconductor.org/browse/drawProteins/ |
| Package Short Url | https://bioconductor.org/packages/drawProteins/ |
| Package Downloads Report | Download Stats |