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diggit

Inference of Genetic Variants Driving Cellular Phenotypes


Bioconductor version: Release (3.19)

Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("diggit")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("diggit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diggit")
Using DIGGIT PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version 1.36.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License file LICENSE
Depends R (>= 3.0.2), Biobase, methods
Imports ks, viper(>= 1.3.1), parallel
System Requirements
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Suggests diggitdata
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package diggit_1.36.0.tar.gz
Windows Binary diggit_1.36.0.zip
macOS Binary (x86_64) diggit_1.36.0.tgz
macOS Binary (arm64) diggit_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/diggit
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diggit
Bioc Package Browser https://code.bioconductor.org/browse/diggit/
Package Short Url https://bioconductor.org/packages/diggit/
Package Downloads Report Download Stats