customCMPdb
Customize and Query Compound Annotation Database
Bioconductor version: Release (3.19)
This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.
Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]
Maintainer: Yuzhu Duan <yduan004 at ucr.edu>
Citation (from within R, enter
citation("customCMPdb")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("customCMPdb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("customCMPdb")| customCMPdb | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationHubSoftware, Cheminformatics, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0) |
| Imports | AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache |
| System Requirements | |
| URL | https://github.com/yduan004/customCMPdb/ |
| Bug Reports | https://github.com/yduan004/customCMPdb/issues |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | customCMPdb_1.14.0.tar.gz |
| Windows Binary (x86_64) | customCMPdb_1.14.0.zip |
| macOS Binary (x86_64) | customCMPdb_1.14.0.tgz |
| macOS Binary (arm64) | customCMPdb_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/customCMPdb |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/customCMPdb |
| Bioc Package Browser | https://code.bioconductor.org/browse/customCMPdb/ |
| Package Short Url | https://bioconductor.org/packages/customCMPdb/ |
| Package Downloads Report | Download Stats |