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Enhanced copy-number variation analysis using Illumina DNA methylation arrays

Bioconductor version: Release (3.19)

This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.

Author: Volker Hovestadt, Marc Zapatka

Maintainer: Volker Hovestadt <conumee at>

Citation (from within R, enter citation("conumee")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

conumee HTML R Script
Reference Manual PDF


biocViews CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software
Version 1.38.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL (>= 2)
Depends R (>= 3.5.0), minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest
Imports methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, GenomeInfoDb
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Suggests BiocStyle, knitr, rmarkdown, minfiData, RCurl
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Follow Installation instructions to use this package in your R session.

Source Package conumee_1.38.0.tar.gz
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macOS Binary (x86_64) conumee_1.38.0.tgz
macOS Binary (arm64) conumee_1.38.0.tgz
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