consensus
Cross-platform consensus analysis of genomic measurements via interlaboratory testing method
Bioconductor version: Release (3.19)
An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.
Author: Tim Peters
Maintainer: Tim Peters <t.peters at garvan.org.au>
citation("consensus")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("consensus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("consensus")| Fitting and visualising row-linear models with \texttt{consensus} | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, GeneExpression, Microarray, QualityControl, RNASeq, Regression, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
| License | BSD_3_clause + file LICENSE |
| Depends | R (>= 3.5), RColorBrewer |
| Imports | matrixStats, gplots, grDevices, methods, graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, RUnit, rmarkdown, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | consensus_1.22.0.tar.gz |
| Windows Binary (x86_64) | consensus_1.22.0.zip |
| macOS Binary (x86_64) | consensus_1.22.0.tgz |
| macOS Binary (arm64) | consensus_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/consensus |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/consensus |
| Bioc Package Browser | https://code.bioconductor.org/browse/consensus/ |
| Package Short Url | https://bioconductor.org/packages/consensus/ |
| Package Downloads Report | Download Stats |