clevRvis
Visualization Techniques for Clonal Evolution
Bioconductor version: Release (3.19)
clevRvis provides a set of visualization techniques for clonal evolution. These include shark plots, dolphin plots and plaice plots. Algorithms for time point interpolation as well as therapy effect estimation are provided. Phylogeny-aware color coding is implemented. A shiny-app for generating plots interactively is additionally provided.
Author: Sarah Sandmann [aut, cre]
Maintainer: Sarah Sandmann <sarah.sandmann at uni-muenster.de>
citation("clevRvis")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("clevRvis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("clevRvis")
ClEvR Viz vignette | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ShinyApps, Software, Visualization |
Version | 1.4.0 |
In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
License | LGPL-3 |
Depends | |
Imports | shiny, ggraph, igraph, ggiraph, cowplot, htmlwidgets, readxl, dplyr, readr, purrr, tibble, patchwork, R.utils, shinyWidgets, colorspace, shinyhelper, shinycssloaders, ggnewscale, shinydashboard, DT, colourpicker, grDevices, methods, utils, stats, ggplot2, magrittr, tools |
System Requirements | |
URL | https://github.com/sandmanns/clevRvis |
Bug Reports | https://github.com/sandmanns/clevRvis/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | clevRvis_1.4.0.tar.gz |
Windows Binary | clevRvis_1.4.0.zip (64-bit only) |
macOS Binary (x86_64) | clevRvis_1.4.0.tgz |
macOS Binary (arm64) | clevRvis_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/clevRvis |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/clevRvis |
Bioc Package Browser | https://code.bioconductor.org/browse/clevRvis/ |
Package Short Url | https://bioconductor.org/packages/clevRvis/ |
Package Downloads Report | Download Stats |