cellxgenedp
Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal
Bioconductor version: Release (3.19)
The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.
Author: Martin Morgan [aut, cre] 
, Kayla Interdonato [aut]
Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>
citation("cellxgenedp")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cellxgenedp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellxgenedp")| Case studies | HTML | R Script |
| Discovery and retrieval | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, SingleCell, Software, ThirdPartyClient |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
| License | Artistic-2.0 |
| Depends | dplyr |
| Imports | httr, curl, utils, tools, shiny, DT, rjsoncons |
| System Requirements | |
| URL | https://mtmorgan.github.io/cellxgenedp/ https://github.com/mtmorgan/cellxgenedp |
| Bug Reports | https://github.com/mtmorgan/cellxgenedp/issues |
See More
| Suggests | zellkonverter, SingleCellExperiment, HDF5Array, tidyr, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cellxgenedp_1.8.0.tar.gz |
| Windows Binary (x86_64) | cellxgenedp_1.8.0.zip (64-bit only) |
| macOS Binary (x86_64) | cellxgenedp_1.8.0.tgz |
| macOS Binary (arm64) | cellxgenedp_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cellxgenedp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellxgenedp |
| Bioc Package Browser | https://code.bioconductor.org/browse/cellxgenedp/ |
| Package Short Url | https://bioconductor.org/packages/cellxgenedp/ |
| Package Downloads Report | Download Stats |