cbaf
Automated functions for comparing various omic data from cbioportal.org
Bioconductor version: Release (3.19)
This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.
Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]
Maintainer: Arman Shahrisa <shahrisa.arman at hotmail.com>
citation("cbaf")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cbaf")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cbaf")| cbaf | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AssayDomain, BiomedicalInformatics, ComparativeGenomics, DNAMethylation, Epigenetics, GeneExpression, Genetics, Microarray, ResearchField, Software, Transcription, Transcriptomics |
| Version | 1.26.3 |
| In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1) |
| Imports | BiocFileCache, RColorBrewer, cBioPortalData, genefilter, gplots, grDevices, stats, utils, openxlsx |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cbaf_1.26.3.tar.gz |
| Windows Binary (x86_64) | cbaf_1.26.3.zip |
| macOS Binary (x86_64) | cbaf_1.26.3.tgz |
| macOS Binary (arm64) | cbaf_1.26.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cbaf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cbaf |
| Bioc Package Browser | https://code.bioconductor.org/browse/cbaf/ |
| Package Short Url | https://bioconductor.org/packages/cbaf/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.19 | Source Archive |