alabaster.se
Load and Save SummarizedExperiments from File
Bioconductor version: Release (3.19)
Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("alabaster.se")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.se")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alabaster.se")| Saving and loading SummarizedExperiments | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, DataRepresentation, Software |
| Version | 1.4.1 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | SummarizedExperiment, alabaster.base |
| Imports | methods, alabaster.ranges, alabaster.matrix, BiocGenerics, S4Vectors, IRanges, GenomicRanges, jsonlite |
| System Requirements | |
| URL |
See More
| Suggests | rmarkdown, knitr, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | alabaster.mae, alabaster.sce, alabaster.vcf, alabaster, celldex |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | alabaster.se_1.4.1.tar.gz |
| Windows Binary (x86_64) | alabaster.se_1.4.1.zip |
| macOS Binary (x86_64) | alabaster.se_1.4.1.tgz |
| macOS Binary (arm64) | alabaster.se_1.4.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/alabaster.se |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.se |
| Bioc Package Browser | https://code.bioconductor.org/browse/alabaster.se/ |
| Package Short Url | https://bioconductor.org/packages/alabaster.se/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.19 | Source Archive |