TurboNorm
A fast scatterplot smoother suitable for microarray normalization
Bioconductor version: Release (3.19)
A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.
Author: Maarten van Iterson and Chantal van Leeuwen
Maintainer: Maarten van Iterson <mviterson at gmail.com>
citation("TurboNorm")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TurboNorm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TurboNorm")| TurboNorm Overview | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CpGIsland, DNAMethylation, MethylationArray, Microarray, Normalization, OneChannel, Preprocessing, Software, TwoChannel |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13.5 years) |
| License | LGPL |
| Depends | R (>= 2.12.0), convert, limma(>= 1.7.0), marray |
| Imports | stats, grDevices, affy, lattice |
| System Requirements | |
| URL | http://www.humgen.nl/MicroarrayAnalysisGroup.html |
See More
| Suggests | BiocStyle, affydata, hgu95av2cdf |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TurboNorm_1.52.0.tar.gz |
| Windows Binary (x86_64) | TurboNorm_1.52.0.zip |
| macOS Binary (x86_64) | TurboNorm_1.52.0.tgz |
| macOS Binary (arm64) | TurboNorm_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TurboNorm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TurboNorm |
| Bioc Package Browser | https://code.bioconductor.org/browse/TurboNorm/ |
| Package Short Url | https://bioconductor.org/packages/TurboNorm/ |
| Package Downloads Report | Download Stats |