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Functions for analyzing SELEX-seq data

Bioconductor version: Release (3.19)

Tools for quantifying DNA binding specificities based on SELEX-seq data.

Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker

Maintainer: Harmen J. Bussemaker <hjb2004 at>

Citation (from within R, enter citation("SELEX")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Motif Discovery with SELEX-seq PDF R Script
Reference Manual PDF


biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version 1.36.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL (>=2)
Depends rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports stats, utils
System Requirements Java (>= 1.5)
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Follow Installation instructions to use this package in your R session.

Source Package SELEX_1.36.0.tar.gz
Windows Binary
macOS Binary (x86_64) SELEX_1.36.0.tgz
macOS Binary (arm64) SELEX_1.36.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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