RCX
R package implementing the Cytoscape Exchange (CX) format
DOI: 10.18129/B9.bioc.RCX
Bioconductor version: Release (3.19)
Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.
Author: Florian Auer [aut, cre] 
Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>
citation("RCX")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RCX")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCX")| 01. RCX - an R package implementing the Cytoscape Exchange (CX) format | HTML | R Script |
| 02. Creating RCX from scratch | HTML | R Script |
| 03. Extending the RCX Data Model | HTML | R Script |
| Appendix: The RCX and CX Data Model | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Network, Pathways, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.2.0) |
| Imports | jsonlite, plyr, igraph, methods |
| System Requirements | |
| URL | https://github.com/frankkramer-lab/RCX |
| Bug Reports | https://github.com/frankkramer-lab/RCX/issues |
See More
| Suggests | BiocStyle, testthat, knitr, rmarkdown, base64enc, graph |
| Linking To | |
| Enhances | |
| Depends On Me | ndexr |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RCX_1.8.0.tar.gz |
| Windows Binary (x86_64) | RCX_1.8.0.zip |
| macOS Binary (x86_64) | RCX_1.8.0.tgz |
| macOS Binary (arm64) | RCX_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RCX |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RCX |
| Bioc Package Browser | https://code.bioconductor.org/browse/RCX/ |
| Package Short Url | https://bioconductor.org/packages/RCX/ |
| Package Downloads Report | Download Stats |