QuartPAC
Identification of mutational clusters in protein quaternary structures
Bioconductor version: Release (3.19)
Identifies clustering of somatic mutations in proteins over the entire quaternary structure.
Author: Gregory Ryslik, Yuwei Cheng, Hongyu Zhao
Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>
Citation (from within R, enter
citation("QuartPAC")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("QuartPAC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("QuartPAC")| SpacePAC: Identifying mutational clusters in 3D protein space using simulation | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, Proteomics, Software, SomaticMutation |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | GPL-2 |
| Depends | iPAC, GraphPAC, SpacePAC, data.table |
| Imports | Biostrings, pwalign |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, rgl |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | QuartPAC_1.36.0.tar.gz |
| Windows Binary (x86_64) | QuartPAC_1.36.0.zip |
| macOS Binary (x86_64) | QuartPAC_1.36.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/QuartPAC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/QuartPAC |
| Bioc Package Browser | https://code.bioconductor.org/browse/QuartPAC/ |
| Package Short Url | https://bioconductor.org/packages/QuartPAC/ |
| Package Downloads Report | Download Stats |