NTW

Predict gene network using an Ordinary Differential Equation (ODE) based method


Bioconductor version: Release (3.19)

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Author: Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini

Maintainer: Yuanhua Liu <liuyuanhua at picb.ac.cn>

Citation (from within R, enter citation("NTW")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NTW")
NTW vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Preprocessing, Software
Version 1.54.0
In Bioconductor since BioC 2.7 (R-2.12) (14 years)
License GPL-2
Depends R (>= 2.3.0)
Imports mvtnorm, stats, utils
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NTW_1.54.0.tar.gz
Windows Binary NTW_1.54.0.zip
macOS Binary (x86_64) NTW_1.54.0.tgz
macOS Binary (arm64) NTW_1.54.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/NTW
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NTW
Bioc Package Browser https://code.bioconductor.org/browse/NTW/
Package Short Url https://bioconductor.org/packages/NTW/
Package Downloads Report Download Stats