HybridMTest
Hybrid Multiple Testing
Bioconductor version: Release (3.19)
Performs hybrid multiple testing that incorporates method selection and assumption evaluations into the analysis using empirical Bayes probability (EBP) estimates obtained by Grenander density estimation. For instance, for 3-group comparison analysis, Hybrid Multiple testing considers EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test of normality as weigth. Instead of just using EBPs from F-test only or using H-test only, this methodology combines both types of EBPs through EBPs from Shapiro Wilk test of normality. This methodology uses then the law of total EBPs.
Author: Stan Pounds <stanley.pounds at stjude.org>, Demba Fofana <demba.fofana at stjude.org>
Maintainer: Demba Fofana <demba.fofana at stjude.org>
citation("HybridMTest")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HybridMTest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HybridMTest")| Hybrid Multiple Testing | R Script | |
| Reference Manual |
Details
| biocViews | GeneExpression, Genetics, Microarray, Software |
| Version | 1.48.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12.5 years) |
| License | GPL Version 2 or later |
| Depends | R (>= 2.9.0), Biobase, fdrtool, MASS, survival |
| Imports | stats |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | APAlyzer |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HybridMTest_1.48.0.tar.gz |
| Windows Binary (x86_64) | HybridMTest_1.48.0.zip (64-bit only) |
| macOS Binary (x86_64) | HybridMTest_1.48.0.tgz |
| macOS Binary (arm64) | HybridMTest_1.48.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HybridMTest |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HybridMTest |
| Bioc Package Browser | https://code.bioconductor.org/browse/HybridMTest/ |
| Package Short Url | https://bioconductor.org/packages/HybridMTest/ |
| Package Downloads Report | Download Stats |