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Heatplus

Heatmaps with row and/or column covariates and colored clusters


Bioconductor version: Release (3.19)

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Author: Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

Citation (from within R, enter citation("Heatplus")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Heatplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Heatplus")
Annotated and regular heatmaps PDF R Script
Commented package source PDF R Script
Old functions (deprecated) PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Microarray, Software, Visualization
Version 3.12.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License GPL (>= 2)
Depends
Imports graphics, grDevices, stats, RColorBrewer
System Requirements
URL https://github.com/alexploner/Heatplus
Bug Reports https://github.com/alexploner/Heatplus/issues
See More
Suggests Biobase, hgu95av2.db, limma
Linking To
Enhances
Depends On Me phenoTest, tRanslatome, heatmapFlex
Imports Me
Suggests Me mtbls2, RforProteomics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Heatplus_3.12.0.tar.gz
Windows Binary Heatplus_3.12.0.zip
macOS Binary (x86_64) Heatplus_3.12.0.tgz
macOS Binary (arm64) Heatplus_3.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Heatplus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Heatplus
Bioc Package Browser https://code.bioconductor.org/browse/Heatplus/
Package Short Url https://bioconductor.org/packages/Heatplus/
Package Downloads Report Download Stats