GladiaTOX

R Package for Processing High Content Screening data

Bioconductor version: Release (3.19)

GladiaTOX R package is an open-source, flexible solution to high-content screening data processing and reporting in biomedical research. GladiaTOX takes advantage of the tcpl core functionalities and provides a number of extensions: it provides a web-service solution to fetch raw data; it computes severity scores and exports ToxPi formatted files; furthermore it contains a suite of functionalities to generate pdf reports for quality control and data processing.

Author: Vincenzo Belcastro [aut, cre], Dayne L Filer [aut], Stephane Cano [aut]

Maintainer: PMP S.A. R Support <DL.RSupport at pmi.com>

Citation (from within R, enter citation("GladiaTOX")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GladiaTOX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GladiaTOX")

GladiaTOX	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Normalization, Preprocessing, QualityControl, Software, WorkflowStep
Version	1.20.0
In Bioconductor since	BioC 3.9 (R-3.6) (5.5 years)
License	GPL-2
Depends	R (>= 3.6.0), data.table (>= 1.9.4)
Imports	DBI, RMariaDB, RSQLite, numDeriv, RColorBrewer, parallel, stats, methods, graphics, grDevices, xtable, tools, brew, stringr, RJSONIO, ggplot2, ggrepel, tidyr, utils, RCurl, XML
System Requirements
URL

Suggests	roxygen2, knitr, rmarkdown, testthat, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GladiaTOX_1.20.0.tar.gz
Windows Binary (x86_64)	GladiaTOX_1.20.0.zip
macOS Binary (x86_64)	GladiaTOX_1.20.0.tgz
macOS Binary (arm64)	GladiaTOX_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GladiaTOX
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GladiaTOX
Bioc Package Browser	https://code.bioconductor.org/browse/GladiaTOX/
Package Short Url	https://bioconductor.org/packages/GladiaTOX/
Package Downloads Report	Download Stats