GeneOverlap
Test and visualize gene overlaps
Bioconductor version: Release (3.19)
Test two sets of gene lists and visualize the results.
Author: Li Shen, Icahn School of Medicine at Mount Sinai <shenli.sam at gmail.com>
Maintainer: Ant<c3><b3>nio Miguel de Jesus Domingues, Max-Planck Institute for Cell Biology and Genetics <amjdomingues at gmail.com>
Citation (from within R, enter
citation("GeneOverlap")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneOverlap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneOverlap")| Testing and visualizing gene overlaps with the "GeneOverlap" package | R Script | |
| Reference Manual |
Details
| biocViews | MultipleComparison, Software, Visualization |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | stats, RColorBrewer, gplots, methods |
| System Requirements | |
| URL | http://shenlab-sinai.github.io/shenlab-sinai/ |
See More
| Suggests | RUnit, BiocGenerics, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ATACCoGAPS |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeneOverlap_1.40.0.tar.gz |
| Windows Binary (x86_64) | GeneOverlap_1.40.0.zip |
| macOS Binary (x86_64) | GeneOverlap_1.40.0.tgz |
| macOS Binary (arm64) | GeneOverlap_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneOverlap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneOverlap |
| Bioc Package Browser | https://code.bioconductor.org/browse/GeneOverlap/ |
| Package Short Url | https://bioconductor.org/packages/GeneOverlap/ |
| Package Downloads Report | Download Stats |