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GSRI

Gene Set Regulation Index


Bioconductor version: Release (3.19)

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("GSRI")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSRI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")
Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneRegulation, GeneSetEnrichment, Microarray, Software, Transcription
Version 2.52.0
In Bioconductor since BioC 2.6 (R-2.11) (14.5 years)
License GPL-3
Depends R (>= 2.14.2), fdrtool
Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
System Requirements
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Suggests limma, hgu95av2.db
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Enhances parallel
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSRI_2.52.0.tar.gz
Windows Binary (x86_64) GSRI_2.52.0.zip
macOS Binary (x86_64) GSRI_2.52.0.tgz
macOS Binary (arm64) GSRI_2.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GSRI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSRI
Bioc Package Browser https://code.bioconductor.org/browse/GSRI/
Package Short Url https://bioconductor.org/packages/GSRI/
Package Downloads Report Download Stats