GENIE3

GEne Network Inference with Ensemble of trees

Bioconductor version: Release (3.19)

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

Maintainer: Van Anh Huynh-Thu <vahuynh at uliege.be>

Citation (from within R, enter citation("GENIE3")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GENIE3")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GENIE3")

biocViews	DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology
Version	1.26.0
In Bioconductor since	BioC 3.6 (R-3.4) (7 years)
License	GPL (>= 2)
Depends
Imports	stats, reshape2, dplyr
System Requirements
URL

Suggests	knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	BioNERO, MetNet, bulkAnalyseR
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	GENIE3_1.26.0.tar.gz
Windows Binary (x86_64)	GENIE3_1.26.0.zip
macOS Binary (x86_64)	GENIE3_1.26.0.tgz
macOS Binary (arm64)	GENIE3_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GENIE3
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GENIE3
Bioc Package Browser	https://code.bioconductor.org/browse/GENIE3/
Package Short Url	https://bioconductor.org/packages/GENIE3/
Package Downloads Report	Download Stats