GA4GHshiny
Shiny application for interacting with GA4GH-based data servers
Bioconductor version: Release (3.19)
GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.
Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb], Elizabeth Borgognoni [ctb]
Maintainer: Welliton Souza <well309 at gmail.com>
citation("GA4GHshiny")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GA4GHshiny")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GA4GHshiny")
GA4GHshiny | HTML | R Script |
Reference Manual |
Details
biocViews | GUI, Software |
Version | 1.26.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | GPL-3 |
Depends | GA4GHclient |
Imports | AnnotationDbi, BiocGenerics, dplyr, DT, GenomeInfoDb, openxlsx, GenomicFeatures, methods, purrr, S4Vectors, shiny, shinyjs, tidyr, shinythemes |
System Requirements | |
URL | https://github.com/labbcb/GA4GHshiny |
Bug Reports | https://github.com/labbcb/GA4GHshiny/issues |
See More
Suggests | BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GA4GHshiny_1.26.0.tar.gz |
Windows Binary | GA4GHshiny_1.26.0.zip |
macOS Binary (x86_64) | GA4GHshiny_1.26.0.tgz |
macOS Binary (arm64) | GA4GHshiny_1.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GA4GHshiny |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GA4GHshiny |
Bioc Package Browser | https://code.bioconductor.org/browse/GA4GHshiny/ |
Package Short Url | https://bioconductor.org/packages/GA4GHshiny/ |
Package Downloads Report | Download Stats |