DominoEffect
Identification and Annotation of Protein Hotspot Residues
Bioconductor version: Release (3.19)
The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.
Author: Marija Buljan and Peter Blattmann
Maintainer: Marija Buljan <marija.buljan.2 at gmail.com>, Peter Blattmann <peter_blattmann at bluewin.ch>
Citation (from within R, enter
citation("DominoEffect")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DominoEffect")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DominoEffect")| Vignette for DominoEffect package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, Proteomics, SequenceMatching, Software, SomaticMutation |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.5) |
| Imports | biomaRt, data.table, utils, stats, Biostrings, pwalign, SummarizedExperiment, VariantAnnotation, AnnotationDbi, GenomeInfoDb, IRanges, GenomicRanges, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, testthat, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DominoEffect_1.24.0.tar.gz |
| Windows Binary (x86_64) | DominoEffect_1.24.0.zip |
| macOS Binary (x86_64) | DominoEffect_1.24.0.tgz |
| macOS Binary (arm64) | DominoEffect_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DominoEffect |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DominoEffect |
| Bioc Package Browser | https://code.bioconductor.org/browse/DominoEffect/ |
| Package Short Url | https://bioconductor.org/packages/DominoEffect/ |
| Package Downloads Report | Download Stats |