CRISPRball
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering
Bioconductor version: Release (3.19)
A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.
Author: Jared Andrews [aut, cre] 
, Jacob Steele [ctb]
Maintainer: Jared Andrews <jared.andrews07 at gmail.com>
citation("CRISPRball")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CRISPRball")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CRISPRball")| CRISPRball Quick Start | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CRISPR, GUI, QualityControl, ShinyApps, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.4.0), shinyBS |
| Imports | DT, shiny, grid, ComplexHeatmap, InteractiveComplexHeatmap, graphics, stats, ggplot2, plotly, shinyWidgets, shinycssloaders, shinyjqui, dittoSeq, matrixStats, colourpicker, shinyjs, MAGeCKFlute, circlize, PCAtools, utils, grDevices, htmlwidgets, methods |
| System Requirements | |
| URL | https://github.com/j-andrews7/CRISPRball |
| Bug Reports | https://support.bioconductor.org/ |
See More
| Suggests | BiocStyle, msigdbr, depmap, pool, RSQLite, mygene, testthat (>= 3.0.0), knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CRISPRball_1.0.0.tar.gz |
| Windows Binary (x86_64) | CRISPRball_1.0.0.zip |
| macOS Binary (x86_64) | CRISPRball_1.0.0.tgz |
| macOS Binary (arm64) | CRISPRball_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CRISPRball |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CRISPRball |
| Bioc Package Browser | https://code.bioconductor.org/browse/CRISPRball/ |
| Package Short Url | https://bioconductor.org/packages/CRISPRball/ |
| Package Downloads Report | Download Stats |