CNTools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Release (3.19)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("CNTools")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")

NCTools HowTo	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.60.0
In Bioconductor since	BioC 2.5 (R-2.10) (15 years)
License	LGPL
Depends	R (>= 2.10), methods, tools, stats, genefilter
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	cghMCR
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNTools_1.60.0.tar.gz
Windows Binary (x86_64)	CNTools_1.60.0.zip (64-bit only)
macOS Binary (x86_64)	CNTools_1.60.0.tgz
macOS Binary (arm64)	CNTools_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNTools
Bioc Package Browser	https://code.bioconductor.org/browse/CNTools/
Package Short Url	https://bioconductor.org/packages/CNTools/
Package Downloads Report	Download Stats