CNORdt

Add-on to CellNOptR: Discretized time treatments

Bioconductor version: Release (3.19)

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Author: A. MacNamara

Maintainer: A. MacNamara <aidan.macnamara at ebi.ac.uk>

Citation (from within R, enter citation("CNORdt")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORdt")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORdt")

Using multiple time points to train logic models to data	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, CellBiology, ImmunoOncology, Proteomics, Software, TimeCourse
Version	1.46.0
In Bioconductor since	BioC 2.11 (R-2.15) (12 years)
License	GPL-2
Depends	R (>= 1.8.0), CellNOptR(>= 0.99), abind
Imports
System Requirements
URL

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNORdt_1.46.0.tar.gz
Windows Binary (x86_64)	CNORdt_1.46.0.zip (64-bit only)
macOS Binary (x86_64)	CNORdt_1.46.0.tgz
macOS Binary (arm64)	CNORdt_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNORdt
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNORdt
Bioc Package Browser	https://code.bioconductor.org/browse/CNORdt/
Package Short Url	https://bioconductor.org/packages/CNORdt/
Package Downloads Report	Download Stats