ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Bioconductor version: Release (3.19)
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.
Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan
Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>
Citation (from within R, enter
citation("ArrayExpress")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ArrayExpress")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ArrayExpress")| ArrayExpress: Import and convert ArrayExpress data sets into R object | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Microarray, OneChannel, Software, TwoChannel |
| Version | 1.64.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (16 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.9.0), Biobase(>= 2.4.0) |
| Imports | oligo, limma, httr, utils, jsonlite, rlang, tools, methods |
| System Requirements | |
| URL |
See More
| Suggests | affy |
| Linking To | |
| Enhances | |
| Depends On Me | DrugVsDisease, maEndToEnd |
| Imports Me | |
| Suggests Me | Hiiragi2013, bapred, seeker |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ArrayExpress_1.64.0.tar.gz |
| Windows Binary (x86_64) | ArrayExpress_1.64.0.zip |
| macOS Binary (x86_64) | ArrayExpress_1.64.0.tgz |
| macOS Binary (arm64) | ArrayExpress_1.64.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ArrayExpress |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ArrayExpress |
| Bioc Package Browser | https://code.bioconductor.org/browse/ArrayExpress/ |
| Package Short Url | https://bioconductor.org/packages/ArrayExpress/ |
| Package Downloads Report | Download Stats |