ASSET
An R package for subset-based association analysis of heterogeneous traits and subtypes
Bioconductor version: Release (3.19)
An R package for subset-based analysis of heterogeneous traits and disease subtypes. The package allows the user to search through all possible subsets of z-scores to identify the subset of traits giving the best meta-analyzed z-score. Further, it returns a p-value adjusting for the multiple-testing involved in the search. It also allows for searching for the best combination of disease subtypes associated with each variant.
Author: Samsiddhi Bhattacharjee [aut, cre], Guanghao Qi [aut], Nilanjan Chatterjee [aut], William Wheeler [aut]
Maintainer: Samsiddhi Bhattacharjee <sb1 at nibmg.ac.in>
citation("ASSET")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASSET")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASSET")| ASSET Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GenomeWideAssociation, MultipleComparison, SNP, Software, StatisticalMethod |
| Version | 2.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
| License | GPL-2 + file LICENSE |
| Depends | R (>= 3.5.0), stats, graphics |
| Imports | MASS, msm, rmeta |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | REBET |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ASSET_2.22.0.tar.gz |
| Windows Binary (x86_64) | ASSET_2.22.0.zip |
| macOS Binary (x86_64) | ASSET_2.22.0.tgz |
| macOS Binary (arm64) | ASSET_2.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ASSET |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASSET |
| Bioc Package Browser | https://code.bioconductor.org/browse/ASSET/ |
| Package Short Url | https://bioconductor.org/packages/ASSET/ |
| Package Downloads Report | Download Stats |