Package: spatialHeatmap
Type: Package
Title: spatialHeatmap
Version: 2.10.1
Date: 2024-06-14
Authors@R: c(
  person(given="Jianhai", family="Zhang", role=c("aut", "trl", "cre"), email="jzhan067@ucr.edu", comment=""),
  person(given="Le", family="Zhang", role="aut", email="lzhan140@ucr.edu", comment=""),
  person(given="Jordan", family="Hayes", role="aut", email="jhayes@ucr.edu", comment=""),
  person(given="Brendan", family="Gongol", role="aut", email="brendan.gongol@ucr.edu", comment=""),
  person(given="Alexander", family="Borowsky", role="aut", email="aboro002@ucr.edu", comment=""),
  person(given="Julia", family="Bailey-Serres", role="aut", email="julia.bailey@ucr.edu", comment=""),
  person(given="Thomas", family="Girke", role="aut", email="thomas.girke@ucr.edu", comment="")
  )
Description: The spatialHeatmap package offers the primary functionality for visualizing cell-, tissue- and organ-specific assay data in spatial anatomical images. Additionally, it provides extended functionalities for large-scale data mining routines and co-visualizing bulk and single-cell data.
License: Artistic-2.0
Encoding: UTF-8
biocViews: Spatial, Visualization, Microarray, Sequencing,
        GeneExpression, DataRepresentation, Network, Clustering,
        GraphAndNetwork, CellBasedAssays, ATACSeq, DNASeq,
        TissueMicroarray, SingleCell, CellBiology, GeneTarget
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Imports: data.table, dplyr, edgeR, genefilter, ggplot2, grImport, grid,
        gridExtra, gplots, igraph, methods, Matrix, rsvg, shiny,
        grDevices, graphics, ggplotify, parallel, reshape2, scater,
        scuttle, scran, stats, SummarizedExperiment,
        SingleCellExperiment, shinydashboard, S4Vectors, spsComps (>=
        0.3.3.0), tibble, utils, xml2
Suggests: AnnotationDbi, av, BiocParallel, BiocFileCache, BiocGenerics,
        BiocStyle, BiocSingular, Biobase, cachem, DESeq2, dendextend,
        DT, dynamicTreeCut, flashClust, ggdendro, HDF5Array, htmltools,
        htmlwidgets, kableExtra, knitr, limma, magick, memoise,
        ExpressionAtlas, GEOquery, org.Hs.eg.db, org.Mm.eg.db,
        org.At.tair.db, org.Dr.eg.db, org.Dm.eg.db, pROC, plotly,
        rmarkdown, rols, rappdirs, RUnit, Rtsne, rhdf5, shinyWidgets,
        shinyjs, shinyBS, sortable, Seurat, sparkline, spsUtil, uwot,
        UpSetR, visNetwork, WGCNA, xlsx, yaml
BugReports: https://github.com/jianhaizhang/spatialHeatmap/issues
URL: https://github.com/jianhaizhang/spatialHeatmap
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/spatialHeatmap
git_branch: RELEASE_3_19
git_last_commit: 1c98fbd
git_last_commit_date: 2024-06-21
Repository: Bioconductor 3.19
Date/Publication: 2024-06-23
NeedsCompilation: no
Packaged: 2024-06-24 03:22:38 UTC; biocbuild
Author: Jianhai Zhang [aut, trl, cre],
  Le Zhang [aut],
  Jordan Hayes [aut],
  Brendan Gongol [aut],
  Alexander Borowsky [aut],
  Julia Bailey-Serres [aut],
  Thomas Girke [aut]
Maintainer: Jianhai Zhang <jzhan067@ucr.edu>
Built: R 4.4.0; ; 2024-06-24 20:03:08 UTC; unix
