R wrapper for SpatialDE

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Documentation for package ‘spatialDE’ version 1.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

FSV_sig	Plot Fraction Spatial Variance vs Q-value
MOB_sample_info	Mouse Olfactory Bulb sample metadata
mockSVG	Generate count matrix for spatially variable genes.
modelSearch	Classify Spatially Variable Genes to interpretable fitting classes
modelSearch-method	Classify Spatially Variable Genes to interpretable fitting classes
model_search	Compare model fits with different models
multiGenePlots	Plot Spatial Patterns of Multiple Genes
multiGenePlots-method	Plot Spatial Patterns of Multiple Genes
regress_out	Regress out library size effect
Rep11_MOB_0	Mouse Olfactory Bulb spatial gene expression data
run	Perform SpatialDE test
spatialDE	Find spatially variable genes with *SpatialDE*
spatialDE-method	Find spatially variable genes with *SpatialDE*
spatialPatterns	Automatic expression histology in *SpatialDE*
spatialPatterns-method	Automatic expression histology in *SpatialDE*
spatial_patterns	Group spatially variable genes into spatial patterns using automatic expression histology (AEH)
stabilize	Stabilize variance of counts