Package: simplifyEnrichment
Type: Package
Title: Simplify Functional Enrichment Results
Version: 1.14.0
Date: 2023-11-06
Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
                  comment = c('ORCID'="0000-0002-7395-8709"))
Depends: R (>= 3.6.0), BiocGenerics, grid
Imports: GOSemSim, ComplexHeatmap (>= 2.7.4), circlize, GetoptLong,
        digest, tm, GO.db, org.Hs.eg.db, AnnotationDbi, slam, methods,
        clue, grDevices, graphics, stats, utils, proxyC, Matrix,
        cluster (>= 1.14.2), colorspace, GlobalOptions (>= 0.1.0)
Suggests: knitr, ggplot2, cowplot, mclust, apcluster, MCL, dbscan,
        igraph, gridExtra, dynamicTreeCut, testthat, gridGraphics,
        clusterProfiler, msigdbr, DOSE, DO.db, reactome.db, flexclust,
        BiocManager, InteractiveComplexHeatmap (>= 0.99.11), shiny,
        shinydashboard, cola, hu6800.db, rmarkdown, genefilter,
        gridtext, fpc
Description: A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms
         is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.
biocViews: Software, Visualization, GO, Clustering, GeneSetEnrichment
URL: https://github.com/jokergoo/simplifyEnrichment,
        https://simplifyEnrichment.github.io
VignetteBuilder: knitr
License: MIT + file LICENSE
git_url: https://git.bioconductor.org/packages/simplifyEnrichment
git_branch: RELEASE_3_19
git_last_commit: 019c312
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-04-30
NeedsCompilation: no
Packaged: 2024-05-01 05:22:16 UTC; biocbuild
Author: Zuguang Gu [aut, cre] (<https://orcid.org/0000-0002-7395-8709>)
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Built: R 4.4.0; ; 2024-05-01 12:21:28 UTC; unix
