CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data


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Documentation for package ‘scCB2’ version 1.14.0

Help Pages

CB2FindCell Main function of distinguish real cells from empty droplets using clustering-based Monte-Carlo test
CheckBackgroundCutoff Check different background cutoffs and recommend an appropriate one
FilterGB Filter out low count genes and barcodes from count matrix
GetCellMat Extract real cell matrix from 'CB2FindCell' output and optionally filter out low-quality cells
mbrainSub Subset of 1k Brain Cells from an E18 Mouse
QuickCB2 All-in-one function from raw data to filtered cell matrix
Read10xRaw Read 10x output data
Read10xRawH5 Read 10x output data