factorMap | Plot an MFA factor map for individuals or partial factor map based on padma analysis |
imputed_genes | Accessors for a padmaResults object. |
imputed_genes-method | Accessors for a padmaResults object. |
LUAD_subset | Subset of batch-corrected multi-omic TCGA data in lung adenocarcinoma |
MFA_results | Accessors for a padmaResults object. |
MFA_results-method | Accessors for a padmaResults object. |
mirtarbase | Curated miR-target interaction predictions from miRTarBase |
msigdb | MSigDB canonical pathways and corresponding gene lists |
ngenes | Accessors for a padmaResults object. |
ngenes-method | Accessors for a padmaResults object. |
omicsContrib | Plot the omics contribution per MFA axis and the overall weighted contribution |
padma | Calculate individualized deviation scores from multi-omic data |
padma-method | Calculate individualized deviation scores from multi-omic data |
padma-methods | Calculate individualized deviation scores from multi-omic data |
padmaResults | padmaResults object and constructor |
padmaResults-class | padmaResults object and constructor |
padmaRun | Calculate individualized deviation scores from multi-omic data |
pathway_gene_deviation | Accessors for a padmaResults object. |
pathway_gene_deviation-method | Accessors for a padmaResults object. |
pathway_name | Accessors for a padmaResults object. |
pathway_name-method | Accessors for a padmaResults object. |
removed_genes | Accessors for a padmaResults object. |
removed_genes-method | Accessors for a padmaResults object. |
show | Accessors for a padmaResults object. |
show-method | Accessors for a padmaResults object. |
summary | Summarize results from padma |
summary-method | Summarize results from padma |
summary-methods | Summarize results from padma |