A B C D E F I L M N P R S T U W
immunoClust-package | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry |
addLevel<- | Acessors and Methods for immunoMeta Objects |
addLevel<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
aposteriori | Generic function definitions in immunoClust |
aposteriori-method | Acessors and Methods for immunoClust Objects |
aposteriori-method | Acessors and Methods for immunoMeta Objects |
aposteriori.immunoClust | Acessors and Methods for immunoClust Objects |
aposteriori.immunoMeta | Acessors and Methods for immunoMeta Objects |
bhattacharyya.coeff | Bhattacharyya Distance, Coefficient and Probability |
bhattacharyya.dist | Bhattacharyya Distance, Coefficient and Probability |
bhattacharyya.prob | Bhattacharyya Distance, Coefficient and Probability |
cell.Classify | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
cell.classifyAll | Clustering of Cell-events in the immunoClust-pipeline |
cell.ClustData | Model Based Clustering of Data for a pre-defined Number of Clusters |
cell.EM | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
cell.EMstep | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
cell.EMt | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
cell.Estep | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
cell.Estimation | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
cell.FitModel | immunoClust EMt-iteration on Cell-events given initial Model Parameters |
cell.hclust | Hierarchical Model Based Clustering of Cell-events in the immunoClust-pipeline |
cell.InitialModel | Clustering of Cell-events in the immunoClust-pipeline |
cell.MajorIterationLoop | Clustering of Cell-events in the immunoClust-pipeline |
cell.MajorIterationTrans | Clustering of Cell-events in the immunoClust-pipeline |
cell.ME | immunoClust EM-iteration on Cell-events given initial Cluster Membership Assignment |
cell.MEstep | immunoClust EM-iteration on Cell-events given initial Cluster Membership Assignment |
cell.Mstep | immunoClust EM-iteration on Cell-events given initial Cluster Membership Assignment |
cell.process | Clustering of Cell-events in the immunoClust-pipeline |
cell.SubClustering | immunoClust Model Refinement Step in iterative Cell-events Clustering |
cell.TestSubCluster | immunoClust Model Refinement Step in iterative Cell-events Clustering |
cells | Acessors and Methods for immunoClust Objects |
cells-method | Acessors and Methods for immunoClust Objects |
classified | Acessors and Methods for immunoMeta Objects |
classified-method | Acessors and Methods for immunoMeta Objects |
classified.immunoMeta | Acessors and Methods for immunoMeta Objects |
clusterCoeff | Generic function definitions in immunoClust |
clusterCoeff-method | Acessors and Methods for immunoMeta Objects |
clusterDist | Generic function definitions in immunoClust |
clusterDist-method | Acessors and Methods for immunoMeta Objects |
clusterProb | Generic function definitions in immunoClust |
clusterProb-method | Acessors and Methods for immunoMeta Objects |
clusters | Acessors and Methods for immunoMeta Objects |
clusters-method | Acessors and Methods for immunoMeta Objects |
clusters.immunoMeta | Acessors and Methods for immunoMeta Objects |
dat.exp | immunoClust Meta-clustering Sample |
dat.fcs | immunoClust Cell-clustering Sample |
dat.meta | immunoClust Meta-clustering Results Sample |
datSplom | Scatterplot Matrix of immunoClust Clustering Results |
desc | Acessors and Methods for immunoMeta Objects |
desc-method | Acessors and Methods for immunoMeta Objects |
desc.immunoMeta | Acessors and Methods for immunoMeta Objects |
desc<- | Acessors and Methods for immunoMeta Objects |
desc<--method | Acessors and Methods for immunoMeta Objects |
desc<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
descFull | Acessors and Methods for immunoMeta Objects |
descFull-method | Acessors and Methods for immunoMeta Objects |
descFull.immunoMeta | Acessors and Methods for immunoMeta Objects |
events | Acessors and Methods for immunoMeta Objects |
events-method | Acessors and Methods for immunoClust Objects |
events-method | Acessors and Methods for immunoMeta Objects |
events.immunoClust | Acessors and Methods for immunoClust Objects |
events.immunoMeta | Acessors and Methods for immunoMeta Objects |
finalize | Acessors and Methods for immunoMeta Objects |
finalize-method | Acessors and Methods for immunoMeta Objects |
finalize.immunoMeta | Acessors and Methods for immunoMeta Objects |
findLevel | Acessors and Methods for immunoMeta Objects |
findLevel-method | Acessors and Methods for immunoMeta Objects |
findLevel.immunoMeta | Acessors and Methods for immunoMeta Objects |
immunoClust | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry |
immunoClust-class | immunoClust-Object |
immunoClust.object | immunoClust-Object |
immunoClust.package | immunoClust - Automated Pipeline for Population Detection in Flow Cytometry |
immunoMeta | 'immunoMeta': a class for storing meta-clustering results |
immunoMeta-class | 'immunoMeta': a class for storing meta-clustering results |
immunoMeta-object | 'immunoMeta': a class for storing meta-clustering results |
immunoMeta.class | 'immunoMeta': a class for storing meta-clustering results |
immunoMeta.object | 'immunoMeta': a class for storing meta-clustering results |
label | Generic function definitions in immunoClust |
label-method | Acessors and Methods for immunoClust Objects |
label-method | Acessors and Methods for immunoMeta Objects |
label.immunoClust | Acessors and Methods for immunoClust Objects |
label.immunoMeta | Acessors and Methods for immunoMeta Objects |
level | Acessors and Methods for immunoMeta Objects |
level-method | Acessors and Methods for immunoMeta Objects |
level.immunoMeta | Acessors and Methods for immunoMeta Objects |
level<- | Acessors and Methods for immunoMeta Objects |
level<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
meta.Clustering | Clustering of Cell-clusters in the immunoClust-pipeline |
meta.export | immunoClust Meta-clustering Results Export |
meta.exprs | Collecting Data of an immunoClust vector |
meta.freqTable | immunoClust Meta-clustering Results Export |
meta.hclust | Hierarchical Meta-clustering of Cell-clusters in the immunoClust-pipeline |
meta.majorEvents | immunoClust Meta-clustering Results Export |
meta.ME | immunoClust EM(t)-iteration on Cell-clusters |
meta.Normalize | immunoClust normalization step with the meta.clustering process |
meta.numClusters | immunoClust Meta-clustering Results Export |
meta.numEvents | immunoClust Meta-clustering Results Export |
meta.parMFI | immunoClust Meta-clustering Results Export |
meta.process | Meta-clustering of Cell-clusters in the immunoClust-pipeline |
meta.RegNorm | immunoClust normalization procedure |
meta.relEvents | immunoClust Meta-clustering Results Export |
meta.relEvents2 | immunoClust Meta-clustering Results Export |
meta.relEvents3 | immunoClust Meta-clustering Results Export |
meta.relParent | immunoClust Meta-clustering Results Export |
meta.SON.clustering | meta clustering process with internal SON normalisation |
meta.SON.combineClustering | Transfer the annotation of an immunoMeta-object to an immunoClust-object. |
meta.SubClustering | immunoClust Model Refinement Step in iterative Meta-clustering |
meta.TestSubCluster | immunoClust Model Refinement Step in iterative Meta-clustering |
move<- | Acessors and Methods for immunoMeta Objects |
move<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
mu | Generic function definitions in immunoClust |
mu-method | Acessors and Methods for immunoClust Objects |
mu-method | Acessors and Methods for immunoMeta Objects |
mu.immunoClust | Acessors and Methods for immunoClust Objects |
mu.immunoMeta | Acessors and Methods for immunoMeta Objects |
ncls | Generic function definitions in immunoClust |
ncls-method | Acessors and Methods for immunoClust Objects |
ncls-method | Acessors and Methods for immunoMeta Objects |
ncls.immunoClust | Acessors and Methods for immunoClust Objects |
ncls.immunoMeta | Acessors and Methods for immunoMeta Objects |
nobs | Generic function definitions in immunoClust |
nobs-method | Acessors and Methods for immunoClust Objects |
nobs-method | Acessors and Methods for immunoMeta Objects |
nobs.immunoClust | Acessors and Methods for immunoClust Objects |
nobs.immunoMeta | Acessors and Methods for immunoMeta Objects |
npar | Generic function definitions in immunoClust |
npar-method | Acessors and Methods for immunoClust Objects |
npar-method | Acessors and Methods for immunoMeta Objects |
npar.immunoClust | Acessors and Methods for immunoClust Objects |
npar.immunoMeta | Acessors and Methods for immunoMeta Objects |
nsam | Generic function definitions in immunoClust |
nsam-method | Acessors and Methods for immunoMeta Objects |
nsam.immunoMeta | Acessors and Methods for immunoMeta Objects |
parameters | Generic function definitions in immunoClust |
parameters-method | Acessors and Methods for immunoClust Objects |
parameters-method | Acessors and Methods for immunoMeta Objects |
parameters.immunoClust | Acessors and Methods for immunoClust Objects |
parameters.immunoMeta | Acessors and Methods for immunoMeta Objects |
parameters<- | Generic function definitions in immunoClust |
parameters<--method | Acessors and Methods for immunoClust Objects |
parameters<--method | Acessors and Methods for immunoMeta Objects |
parameters<-.immunoClust | Acessors and Methods for immunoClust Objects |
parameters<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
parent<- | Acessors and Methods for immunoMeta Objects |
parent<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
parent<-.immunoMeta-method | Acessors and Methods for immunoMeta Objects |
plot-method | Scatterplot of immunoClust Clustering Results |
plot-method | Scatterplot of immunoMeta Structured Clustering Results |
plot.immunoClust | Scatterplot of immunoClust Clustering Results |
plot.immunoMeta | Scatterplot of immunoMeta Structured Clustering Results |
prop | Acessors and Methods for immunoMeta Objects |
prop-method | Acessors and Methods for immunoMeta Objects |
prop.immunoMeta | Acessors and Methods for immunoMeta Objects |
prop<- | Acessors and Methods for immunoMeta Objects |
prop<--method | Acessors and Methods for immunoMeta Objects |
prop<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
remove<- | Acessors and Methods for immunoMeta Objects |
remove<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
removed.above | Brief Information of removed Cell-events by immunoClust Cell-event Clustering |
removed.below | Brief Information of removed Cell-events by immunoClust Cell-event Clustering |
sam_clsEvents | Generic function definitions in immunoClust |
sam_clsEvents-method | Acessors and Methods for immunoMeta Objects |
sam_clsEvents.immunoMeta | Acessors and Methods for immunoMeta Objects |
sam_clsMu | Generic function definitions in immunoClust |
sam_clsMu-method | Acessors and Methods for immunoMeta Objects |
sam_clsMu.immunoMeta | Acessors and Methods for immunoMeta Objects |
sam_clsSigma | Generic function definitions in immunoClust |
sam_clsSigma-method | Acessors and Methods for immunoMeta Objects |
sam_clsSigma.immunoMeta | Acessors and Methods for immunoMeta Objects |
sam_clsWeights | Generic function definitions in immunoClust |
sam_clsWeights-method | Acessors and Methods for immunoMeta Objects |
sam_clsWeights.immunoMeta | Acessors and Methods for immunoMeta Objects |
sam_ncls | Generic function definitions in immunoClust |
sam_ncls-method | Acessors and Methods for immunoMeta Objects |
sam_ncls.immunoMeta | Acessors and Methods for immunoMeta Objects |
show | immunoClust-Object |
show-method | immunoClust-Object |
show-method | 'immunoMeta': a class for storing meta-clustering results |
show.immunoClust | immunoClust-Object |
show.immunoMeta | 'immunoMeta': a class for storing meta-clustering results |
sigma | Generic function definitions in immunoClust |
sigma-method | Acessors and Methods for immunoClust Objects |
sigma-method | Acessors and Methods for immunoMeta Objects |
sigma.immunoClust | Acessors and Methods for immunoClust Objects |
sigma.immunoMeta | Acessors and Methods for immunoMeta Objects |
splom | Scatterplot Matrix of immunoClust Clustering Results |
splom-method | Scatterplot Matrix of immunoClust Clustering Results |
splom.immunoClust | Scatterplot Matrix of immunoClust Clustering Results |
subset | Generic function definitions in immunoClust |
subset-method | Acessors and Methods for immunoClust Objects |
subset-method | Acessors and Methods for immunoMeta Objects |
subset.immunoClust | Acessors and Methods for immunoClust Objects |
subset.immunoMeta | Acessors and Methods for immunoMeta Objects |
summary | immunoClust-Object |
summary-method | immunoClust-Object |
summary-method | 'immunoMeta': a class for storing meta-clustering results |
summary.immunoClust | immunoClust-Object |
summary.immunoMeta | 'immunoMeta': a class for storing meta-clustering results |
trans.ApplyToData | immunoClust asinh-Transformation |
trans.FitToData | immunoClust asinh-Transformation Optimization |
transfer<- | Acessors and Methods for immunoMeta Objects |
transfer<--method | Acessors and Methods for immunoMeta Objects |
transfer<-.immunoMeta | Acessors and Methods for immunoMeta Objects |
transformParams | Generic function definitions in immunoClust |
transformParams-method | Acessors and Methods for immunoClust Objects |
transformParams-method | Acessors and Methods for immunoMeta Objects |
transformParams.immunoClust | Acessors and Methods for immunoClust Objects |
transformParams.immunoMeta | Acessors and Methods for immunoMeta Objects |
unclassified | Acessors and Methods for immunoMeta Objects |
unclassified-method | Acessors and Methods for immunoMeta Objects |
unclassified.immunoMeta | Acessors and Methods for immunoMeta Objects |
weights | Generic function definitions in immunoClust |
weights-method | Acessors and Methods for immunoClust Objects |
weights-method | Acessors and Methods for immunoMeta Objects |
weights.immunoClust | Acessors and Methods for immunoClust Objects |
weights.immunoMeta | Acessors and Methods for immunoMeta Objects |