Plot Multiple Sequence Alignment using 'ggplot2'
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Documentation for package ‘ggmsa’ version 1.10.0
Help Pages
| adjust_ally | adjust_ally |
| assign_dms | assign_dms |
| available_colors | List Color Schemes currently available |
| available_fonts | List Font Families currently available |
| available_msa | List MSA objects currently available |
| extract_seq | extract_seq |
| facet_msa | segment MSA |
| geom_GC | geom_GC |
| geom_helix | geom_helix |
| geom_msa | geom_msa |
| geom_msaBar | geom_msaBar |
| geom_seed | geom_seed |
| geom_seqlogo | geom_seqlogo |
| gghelix | gghelix |
| ggmaf | ggmaf |
| ggmsa | ggmsa |
| ggSeqBundle | ggSeqBundle |
| Gram-negative_AKL.fasta | Gram-negative_AKL |
| Gram-positive_AKL.fasta | Gram-positive_AKL |
| GVariation | GVariation |
| LeaderRepeat_All.fa | A sample DNA alignment sequences |
| merge_seq | merge_seq |
| plot | plot method for SeqDiff object |
| plot-method | plot method for SeqDiff object |
| readSSfile | readSSfile |
| read_maf | read_maf |
| reset_pos | reset_pos |
| Rfam | Rfam |
| sample.fasta | A sample data used in ggmsa |
| seedSample.fa | microRNA data used in ggmsa |
| seqdiff | seqdiff |
| SeqDiff-class | show method |
| seqlogo | seqlogo |
| sequence-link-tree.fasta | sequence-link-tree |
| show | show method |
| show-method | show method |
| simplify_hdata | simplify_hdata |
| simplot | simplot |
| theme_msa | theme_msa |
| tidy_hdata | tidy_hdata |
| tidy_maf_df | tidy_maf_df |
| tidy_msa | tidy_msa |
| tp53.fa | TP53 MSA |
| TP53_genes.xlsx | genome locus |
| treeMSA_plot | treeMSA_plot |