`SPOTlight`: Spatial Transcriptomics Deconvolution


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Documentation for package ‘SPOTlight’ version 1.8.0

Help Pages

data Synthetic single-cell, mixture and marker data
getMGS Synthetic single-cell, mixture and marker data
mockSC Synthetic single-cell, mixture and marker data
mockSP Synthetic single-cell, mixture and marker data
plotCorrelationMatrix Plot Correlation Matrix
plotHeatmap Plot group interactions
plotImage Plot JP(E)G/PNG/Raster/RGB images
plotInteractions Plot group interactions
plotNetwork Plot group interactions
plotSpatialScatterpie Spatial scatterpie
plotTopicProfiles Plot NMF topic profiles
runDeconvolution Run Deconvolution using NNLS model
SPOTlight Deconvolution of mixture using single-cell data
trainNMF train NMF model