`SPOTlight`: Spatial Transcriptomics Deconvolution

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Documentation for package ‘SPOTlight’ version 1.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

data	Synthetic single-cell, mixture and marker data
getMGS	Synthetic single-cell, mixture and marker data
mockSC	Synthetic single-cell, mixture and marker data
mockSP	Synthetic single-cell, mixture and marker data
plotCorrelationMatrix	Plot Correlation Matrix
plotHeatmap	Plot group interactions
plotImage	Plot JP(E)G/PNG/Raster/RGB images
plotInteractions	Plot group interactions
plotNetwork	Plot group interactions
plotSpatialScatterpie	Spatial scatterpie
plotTopicProfiles	Plot NMF topic profiles
runDeconvolution	Run Deconvolution using NNLS model
SPOTlight	Deconvolution of mixture using single-cell data
trainNMF	train NMF model