Repetitive Element Methylation Prediction
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Documentation for package ‘REMP’ version 1.28.0
Help Pages
| REMP-package | Repetitive Element Methylation Prediction |
| Alu.hg19.demo | Subset of Alu genomic location dataset (hg19) |
| Alu.hg38.demo | Subset of Alu genomic location dataset (hg38) |
| decodeAnnot | REMProduct instances |
| decodeAnnot-method | REMProduct instances |
| details | REMProduct instances |
| details-method | REMProduct instances |
| fetchRefSeqGene | Get RefSeq gene database |
| fetchRMSK | Get RE database from RepeatMasker |
| findRECpG | Find RE-CpG genomic location given RE ranges information |
| getBackend | Get BiocParallel back-end |
| getGM12878 | Get methylation data of HapMap LCL sample GM12878 profiled by Illumina 450k array or EPIC array |
| getILMN | REMParcel instances |
| getILMN-method | REMParcel instances |
| getParcelInfo | REMParcel instances |
| getParcelInfo-method | REMParcel instances |
| getRE | REMParcel instances |
| getRE-method | REMParcel instances |
| getRECpG | REMParcel instances |
| getRECpG-method | REMParcel instances |
| getRefGene | REMParcel instances |
| getRefGene-method | REMParcel instances |
| GRannot | Annotate genomic ranges data with gene region information. |
| grooMethy | Groom methylation data to fix potential data issues |
| initREMP | RE Annotation Database Initialization |
| REMP | Repetitive Element Methylation Prediction |
| remp | Repetitive element methylation prediction |
| rempAggregate | REMProduct instances |
| rempAggregate-method | REMProduct instances |
| rempAnnot | REMProduct instances |
| rempAnnot-method | REMProduct instances |
| REMParcel | REMParcel instances |
| REMParcel-class | REMParcel instances |
| rempB | REMProduct instances |
| rempB-method | REMProduct instances |
| rempCombine | REMProduct instances |
| rempCombine-method | REMProduct instances |
| rempImp | REMProduct instances |
| rempImp-method | REMProduct instances |
| remplot | REMProduct instances |
| remplot-method | REMProduct instances |
| rempM | REMProduct instances |
| rempM-method | REMProduct instances |
| rempQC | REMProduct instances |
| rempQC-method | REMProduct instances |
| REMProduct | REMProduct instances |
| REMProduct-class | REMProduct instances |
| remprofile | Extract DNA methylation data profiled in RE |
| rempStats | REMProduct instances |
| rempStats-method | REMProduct instances |
| rempTemplate | Prepare data template for REMP |
| rempTrim | REMProduct instances |
| rempTrim-method | REMProduct instances |
| remp_options | Set or get options for REMP package |
| remp_reset | Set or get options for REMP package |
| saveParcel | REMParcel instances |
| saveParcel-method | REMParcel instances |