dplyr-based Access to Bioconductor Annotation Resources
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Documentation for package ‘Organism.dplyr’ version 1.32.0
Help Pages
| AccnumFilter | Filtering src_organism objects |
| AliasFilter | Filtering src_organism objects |
| BasicFilter-class | Filtering src_organism objects |
| cds | Extract genomic features from src_organism objects |
| cdsBy | Extract genomic features from src_organism objects |
| cdsBy_tbl | Extract genomic features from src_organism objects |
| CdsChromFilter | Filtering src_organism objects |
| CdsIdFilter | Filtering src_organism objects |
| CdsNameFilter | Filtering src_organism objects |
| CdsStrandFilter | Filtering src_organism objects |
| cds_tbl | Extract genomic features from src_organism objects |
| CharacterFilter-class | Filtering src_organism objects |
| columns-method | Using the "select" interface on src_organism objects |
| EnsemblFilter | Filtering src_organism objects |
| EnsemblprotFilter | Filtering src_organism objects |
| EnsembltransFilter | Filtering src_organism objects |
| EnzymeFilter | Filtering src_organism objects |
| EvidenceallFilter | Filtering src_organism objects |
| EvidenceFilter | Filtering src_organism objects |
| ExonChromFilter | Filtering src_organism objects |
| exons | Extract genomic features from src_organism objects |
| exonsBy | Extract genomic features from src_organism objects |
| exonsBy_tbl | Extract genomic features from src_organism objects |
| ExonStrandFilter | Filtering src_organism objects |
| exons_tbl | Extract genomic features from src_organism objects |
| fiveUTRsByTranscript | Extract genomic features from src_organism objects |
| fiveUTRsByTranscript_tbl | Extract genomic features from src_organism objects |
| FlybaseCgFilter | Filtering src_organism objects |
| FlybaseFilter | Filtering src_organism objects |
| FlybaseProtFilter | Filtering src_organism objects |
| GeneChromFilter | Filtering src_organism objects |
| genes | Extract genomic features from src_organism objects |
| GeneStrandFilter | Filtering src_organism objects |
| genes_tbl | Extract genomic features from src_organism objects |
| Genomic-Extractors | Extract genomic features from src_organism objects |
| GoallFilter | Filtering src_organism objects |
| GoFilter | Filtering src_organism objects |
| hg38light | Utilities used in examples, vignettes, and tests |
| IntegerFilter-class | Filtering src_organism objects |
| intronsByTranscript | Extract genomic features from src_organism objects |
| intronsByTranscript-method | Extract genomic features from src_organism objects |
| intronsByTranscript_tbl | Extract genomic features from src_organism objects |
| IpiFilter | Filtering src_organism objects |
| keys-method | Using the "select" interface on src_organism objects |
| keytypes-method | Using the "select" interface on src_organism objects |
| MapFilter | Filtering src_organism objects |
| mapIds-method | Using the "select" interface on src_organism objects |
| MgiFilter | Filtering src_organism objects |
| mm10light | Utilities used in examples, vignettes, and tests |
| OmimFilter | Filtering src_organism objects |
| OntologyallFilter | Filtering src_organism objects |
| OntologyFilter | Filtering src_organism objects |
| orgPackageName-method | Create a sqlite database from TxDb and corresponding Org packages |
| PfamFilter | Filtering src_organism objects |
| PmidFilter | Filtering src_organism objects |
| promoters | Extract genomic features from src_organism objects |
| promoters-method | Extract genomic features from src_organism objects |
| promoters_tbl | Extract genomic features from src_organism objects |
| PrositeFilter | Filtering src_organism objects |
| RefseqFilter | Filtering src_organism objects |
| select-method | Using the "select" interface on src_organism objects |
| select_.tbl_organism | Create a sqlite database from TxDb and corresponding Org packages |
| select_tbl | Using the "select" interface on src_organism objects |
| seqinfo-method | Create a sqlite database from TxDb and corresponding Org packages |
| show-method | Filtering src_organism objects |
| src_organism | Create a sqlite database from TxDb and corresponding Org packages |
| src_tbls.src_organism | Create a sqlite database from TxDb and corresponding Org packages |
| src_ucsc | Create a sqlite database from TxDb and corresponding Org packages |
| supportedFilters-method | Filtering src_organism objects |
| supportedOrganisms | Create a sqlite database from TxDb and corresponding Org packages |
| tbl.src_organism | Create a sqlite database from TxDb and corresponding Org packages |
| threeUTRsByTranscript | Extract genomic features from src_organism objects |
| threeUTRsByTranscript_tbl | Extract genomic features from src_organism objects |
| transcripts | Extract genomic features from src_organism objects |
| transcriptsBy | Extract genomic features from src_organism objects |
| transcriptsBy_tbl | Extract genomic features from src_organism objects |
| transcripts_tbl | Extract genomic features from src_organism objects |
| TxChromFilter | Filtering src_organism objects |
| TxStrandFilter | Filtering src_organism objects |
| TxTypeFilter | Filtering src_organism objects |
| WormbaseFilter | Filtering src_organism objects |
| ZfinFilter | Filtering src_organism objects |