Package: FilterFFPE
Type: Package
Title: FFPE Artificial Chimeric Read Filter for NGS data
Version: 1.14.0
Authors@R: person("Lanying", "Wei", email="lanying.wei@uni-muenster.de",
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-4281-8017"))
Description: This package finds and filters artificial chimeric reads 
    specifically generated in next-generation sequencing (NGS) process of 
    formalin-fixed paraffin-embedded (FFPE) tissues. These artificial chimeric 
    reads can lead to a large number of false positive structural variation (SV) 
    calls. The required input is an indexed BAM file of a FFPE sample.
License: LGPL-3
Encoding: UTF-8
Imports: foreach, doParallel, GenomicRanges, IRanges, Rsamtools,
        parallel, S4Vectors
Suggests: BiocStyle
biocViews: StructuralVariation, Sequencing, Alignment, QualityControl,
        Preprocessing
git_url: https://git.bioconductor.org/packages/FilterFFPE
git_branch: RELEASE_3_19
git_last_commit: 5ba1576
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-04-30
NeedsCompilation: no
Packaged: 2024-05-01 03:28:22 UTC; biocbuild
Author: Lanying Wei [aut, cre] (<https://orcid.org/0000-0002-4281-8017>)
Maintainer: Lanying Wei <lanying.wei@uni-muenster.de>
Built: R 4.4.0; ; 2024-05-01 11:56:46 UTC; unix
