Complexome Profiling Analysis package

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Documentation for package ‘ComPrAn’ version 1.12.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

allPeptidesPlot	Create scatter plot
assignClusters	Create a data frames with cluster assignment
cleanData	Clean raw peptide complexomics data
clusterComp	Create components necessary for clustering
compranApp	Execute the complexomics Shiny app
exportClusterAssignments	Covert clustered tables into format for export
extractRepPeps	Extract Only Data Belonging to Representative Peptide
getNormTable	Get normalised table for all proteins
groupHeatMap	Make heatmap
makeBarPlotClusterSummary	Title
makeDist	Make disstance matrix
normalizeTable	Convert extractRepPeps output to a Matrix
normTableForExport	Convert Normalized Dataframe to Export format
normTableWideToLong	Convert Normalized Dataframe To Long format
oneGroupTwoLabelsCoMigration	Compare a Single Group of Proteins Between Two Label States
onlyInOneLabelState	Report Proteins Present In Only One Label State
peptideImport	Import raw peptide complexomics data
pickPeptide	Select Top Peptide For Various Scenarios
proteinPlot	Create Line Plots
protImportForAnalysis	Modify import protein data
simplifyProteins	Simplify Raw Proteins file
splitModLab	Split Modification and Label tags
toFilter	Optional Filtering For Raw Data
twoGroupsWithinLabelCoMigration	Compare a Two Groups of Proteins Within One Label State
uncenteredCor	Perform uncentered correlation