Explores Cancer Testis Genes
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Documentation for package ‘CTexploreR’ version 1.0.0
Help Pages
| CCLE_expression | Gene expression in CCLE Tumors |
| check_names | Check spelling of entered variables |
| CT_correlated_genes | Gene correlations in CCLE cancer cell lines |
| CT_genes | CT genes description table |
| DAC_induction | Gene expression in cells treated or not by a demethylating agent |
| GTEX_expression | Gene expression in normal tissues (GTEx) |
| HPA_cell_type_expression | Gene expression in different human cell types |
| normal_tissues_mean_methylation | Promoter methylation of Cancer-Testis genes in normal tissues |
| normal_tissues_methylation | Methylation of CpGs located in Cancer-Testis promoters in normal tissues |
| normal_tissue_expression_multimapping | Expression values (TPM) of genes in normal tissues with or without multimapping |
| prepare_TCGA_methylation_expression | Prepare methylation and expression data of a gene in TCGA tumors |
| set_fontsize | Determine font size |
| subset_database | Subset databases |
| TCGA_expression | Gene expression in TCGA tumors |
| TCGA_methylation_expression_correlation | Methylation-Expression correlation of Cancer-Testis genes in TCGA samples |
| testis_expression | Gene expression in testis cells |