This R package for performing module repertoire analyses and generating fingerprint representations


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Documentation for package ‘BloodGen3Module’ version 1.12.0

Help Pages

color Color for fingerprint visulization
fingerprintplot Individual fingerprint visualization The fingerprintplot function will generate fingerprint heatmap plots as a pdf file. The file will be saved in the working directory specified for the analysis. The default cut off for visualization is set at 15%, it can be changed to any value between 0-100%.
fold_change calculation of Fold-Change
Gen3_ann Functional annotation for visulization
gridplot Fingerprint grid visualization
Groupcomparison Group comparison analysis
Groupcomparisonlimma Group comparison analysis using limma
Individualcomparison Individual single sample analysis
Module_listGen3 Module identifer and list membership in each module