Counting Reads in High-Throughput Sequencing Screens

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Documentation for package ‘screenCounter’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

screenCounter-package	The screenCounter package
combineComboCounts	Combine combinatorial barcode counts
countComboBarcodes	Count combinatorial barcodes
countDualBarcodes	Count dual barcodes
countDualBarcodesSingleEnd	Count dual barcodes in single-end data
countPairedComboBarcodes	Count paired-end combinatorial barcodes
countRandomBarcodes	Count random barcodes
countSingleBarcodes	Count single barcodes
matchBarcodes	Match sequences to a pool of barcodes
matrixOfComboBarcodes	Count combinatorial barcodes
matrixOfDualBarcodes	Count dual barcodes
matrixOfDualBarcodesSingleEnd	Count dual barcodes in single-end data
matrixOfPairedComboBarcodes	Count paired-end combinatorial barcodes
matrixOfRandomBarcodes	Count random barcodes
matrixOfSingleBarcodes	Count single barcodes
parseBarcodeTemplate	Parse barcode template