pca |
Principal Components Analysis |
pcatune |
Estimate the parameters of regularization for Regularized CCA |
perf |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.mint.pls |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.mint.plsda |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.mint.spls |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.mint.splsda |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.mixo_pls |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.mixo_plsda |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.mixo_spls |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.mixo_splsda |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
perf.sgccda |
Compute evaluation criteria for PLS, sPLS, PLS-DA, sPLS-DA, MINT and DIABLO |
plot.pca |
Show (s)pca explained variance plots |
plot.perf |
Plot for model performance for PSLDA analyses |
plot.perf.mint.plsda.mthd |
Plot for model performance for PSLDA analyses |
plot.perf.mint.splsda.mthd |
Plot for model performance for PSLDA analyses |
plot.perf.pls |
Plot for model performance for PLS analyses |
plot.perf.pls.mthd |
Plot for model performance for PLS analyses |
plot.perf.plsda.mthd |
Plot for model performance for PSLDA analyses |
plot.perf.sgccda.mthd |
Plot for model performance for PSLDA analyses |
plot.perf.spls.mthd |
Plot for model performance for PLS analyses |
plot.perf.splsda.mthd |
Plot for model performance for PSLDA analyses |
plot.rcc |
Canonical Correlations Plot |
plot.sgccda |
Graphical output for the DIABLO framework |
plot.tune |
Plot model performance |
plot.tune.block.splsda |
Plot model performance |
plot.tune.rcc |
Plot the cross-validation score. |
plot.tune.spca |
Plot model performance |
plot.tune.spls |
Plot model performance |
plot.tune.spls1 |
Plot model performance |
plot.tune.splsda |
Plot model performance |
plotArrow |
Arrow sample plot |
plotDiablo |
Graphical output for the DIABLO framework |
plotIndiv |
Plot of Individuals (Experimental Units) |
plotIndiv.mint.pls |
Plot of Individuals (Experimental Units) |
plotIndiv.mint.plsda |
Plot of Individuals (Experimental Units) |
plotIndiv.mint.spls |
Plot of Individuals (Experimental Units) |
plotIndiv.mint.splsda |
Plot of Individuals (Experimental Units) |
plotIndiv.mixo_pls |
Plot of Individuals (Experimental Units) |
plotIndiv.pca |
Plot of Individuals (Experimental Units) |
plotIndiv.rgcca |
Plot of Individuals (Experimental Units) |
plotIndiv.sgcca |
Plot of Individuals (Experimental Units) |
plotLoadings |
Plot of Loading vectors |
plotLoadings.mint.pls |
Plot of Loading vectors |
plotLoadings.mint.plsda |
Plot of Loading vectors |
plotLoadings.mint.spls |
Plot of Loading vectors |
plotLoadings.mint.splsda |
Plot of Loading vectors |
plotLoadings.mixo_pls |
Plot of Loading vectors |
plotLoadings.mixo_plsda |
Plot of Loading vectors |
plotLoadings.mixo_spls |
Plot of Loading vectors |
plotLoadings.mixo_splsda |
Plot of Loading vectors |
plotLoadings.pca |
Plot of Loading vectors |
plotLoadings.pls |
Plot of Loading vectors |
plotLoadings.rcc |
Plot of Loading vectors |
plotLoadings.rgcca |
Plot of Loading vectors |
plotLoadings.sgcca |
Plot of Loading vectors |
plotLoadings.sgccda |
Plot of Loading vectors |
plotLoadings.spls |
Plot of Loading vectors |
plotMarkers |
Plot the values for multivariate markers in block analyses |
plotVar |
Plot of Variables |
plotVar.pca |
Plot of Variables |
plotVar.pls |
Plot of Variables |
plotVar.plsda |
Plot of Variables |
plotVar.rcc |
Plot of Variables |
plotVar.rgcca |
Plot of Variables |
plotVar.sgcca |
Plot of Variables |
plotVar.spca |
Plot of Variables |
plotVar.spls |
Plot of Variables |
plotVar.splsda |
Plot of Variables |
pls |
Partial Least Squares (PLS) Regression |
plsda |
Partial Least Squares Discriminant Analysis (PLS-DA). |
predict |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.block.pls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.block.spls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mint.block.pls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mint.block.plsda |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mint.block.spls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mint.block.splsda |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mint.pls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mint.plsda |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mint.spls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mint.splsda |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mixo_pls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.mixo_spls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.pls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.plsda |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.spls |
Predict Method for (mint).(block).(s)pls(da) methods |
predict.splsda |
Predict Method for (mint).(block).(s)pls(da) methods |
print |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.ipca |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.mint.pls |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.mint.plsda |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.mint.spls |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.mint.splsda |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.mixo_pls |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.mixo_plsda |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.mixo_spls |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.mixo_splsda |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.pca |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.perf.mint.splsda.mthd |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.perf.pls.mthd |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.perf.plsda.mthd |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.perf.sgccda.mthd |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.perf.splsda.mthd |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.predict |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.rcc |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.rgcca |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.sgcca |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.sgccda |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.sipca |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.spca |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.summary |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.tune.block.splsda |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.tune.mint.splsda |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.tune.pca |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.tune.pls |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.tune.rcc |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.tune.spca |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.tune.spls1 |
Print Methods for CCA, (s)PLS, PCA and Summary objects |
print.tune.splsda |
Print Methods for CCA, (s)PLS, PCA and Summary objects |