detect different methylation level (DMR)

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Documentation for package ‘methylMnM’ version 1.42.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

methylMnM-package	MeDIP-Seq and MRE-Seq data analysis
calcFactornew	Normalization factor.
calculatecount	Call C programs to R.
calculatecount1	Call C programs to R.
calculatecountneg	Call C programs to R.
CNVnormal	Normalize copy number variation (CNV).
countcpgbin	Compute the total CpG number of each bin with each CpG site.
countMeDIPbin	Compute the total MeDIP-seq number of each bin.
countMREbin	Compute the total MRE-seq number of each bin.
countMREcpgbin	Compute the MRE CpG number of each bin with MRE CpG sites.
cpgcount	Call C programs to R.
methylMnM	MeDIP-Seq and MRE-Seq data analysis
MnM.qvalue	Estimate the q-values for a given set of p-values
MnM.selectDMR	Select significants of each comparation.
MnM.test	Compute p-value of each bin.
normpdf	Compute p-value with normal distribution.
normpdft1	Compute p-value with normal distribution.
pmultinom	Call C programs to R.
qvalue.rank	Rank values.
removeblacklist	Remove blacklist.