An integrated analysis package of Gene expression and Copy number alteration

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Documentation for package ‘iGC’ version 1.34.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

iGC-package	iGC: an integrated analysis package of gene expression and copy number alteration
create_gene_cna	Load and map CNA gain/loss onto human gene location by genome reference
create_gene_exp	Create an joint gene expression table of all samples
create_sample_desc	Create sample description table containing all required inputs
direct_gene_cna	Load the existed CNA gain/loss based on gene location.
find_cna_driven_gene	Perform an integrated analysis of gene expression (GE) and copy number alteration (CNA)
hg19DBNM	hg19-RefSeq
iGC	iGC: an integrated analysis package of gene expression and copy number alteration