Differential Topology, Progression and Differentiation
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Documentation for package ‘condiments’ version 1.12.0
Help Pages
| create_differential_topology | Create Example function |
| differentiationTest | Differential differentiation |
| fateSelectionTest | Differential fate selection Test |
| fateSelectionTest-method | Differential fate selection Test |
| fateSelectionTest_multipleSamples | Differential fate selection Test with multiple samples |
| fateSelectionTest_multipleSamples-method | Differential fate selection Test with multiple samples |
| imbalance_score | Imbalance Score |
| imbalance_score-method | Imbalance Score |
| merge_sds | Merge slingshots datasets |
| nLineages | Number of lineages |
| nLineages-method | Number of lineages |
| progressionTest | Differential Progression Test |
| progressionTest-method | Differential Progression Test |
| progressionTest_multipleSamples | Differential Progression Test with multiple samples |
| progressionTest_multipleSamples-method | Differential Progression Test with multiple samples |
| slingshot_conditions | Refitting slingshot per condition |
| slingshot_conditions-method | Refitting slingshot per condition |
| topologyTest | Differential Topology Test |
| topologyTest-method | Differential Topology Test |
| topologyTest_multipleSamples | Differential Topology Test with multiple samples |
| topologyTest_multipleSamples-method | Differential Topology Test with multiple samples |
| toy_dataset | A toy dataset used in the vignette and in the examples |
| weights_from_pst | weights_from_pst |
| weights_from_pst-method | weights_from_pst |