Differential Topology, Progression and Differentiation


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Documentation for package ‘condiments’ version 1.12.0

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create_differential_topology Create Example function
differentiationTest Differential differentiation
fateSelectionTest Differential fate selection Test
fateSelectionTest-method Differential fate selection Test
fateSelectionTest_multipleSamples Differential fate selection Test with multiple samples
fateSelectionTest_multipleSamples-method Differential fate selection Test with multiple samples
imbalance_score Imbalance Score
imbalance_score-method Imbalance Score
merge_sds Merge slingshots datasets
nLineages Number of lineages
nLineages-method Number of lineages
progressionTest Differential Progression Test
progressionTest-method Differential Progression Test
progressionTest_multipleSamples Differential Progression Test with multiple samples
progressionTest_multipleSamples-method Differential Progression Test with multiple samples
slingshot_conditions Refitting slingshot per condition
slingshot_conditions-method Refitting slingshot per condition
topologyTest Differential Topology Test
topologyTest-method Differential Topology Test
topologyTest_multipleSamples Differential Topology Test with multiple samples
topologyTest_multipleSamples-method Differential Topology Test with multiple samples
toy_dataset A toy dataset used in the vignette and in the examples
weights_from_pst weights_from_pst
weights_from_pst-method weights_from_pst