cancer outlier Gene Profile Sets
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Documentation for package ‘coGPS’ version 1.48.0
Help Pages
| coGPS-package | Cancer Outlier Gene Profile Sets |
| CNV_classlab_matched | Sample Data for coGPS |
| CNV_exprs_matched | Sample Data for coGPS |
| coGPS | Cancer Outlier Gene Profile Sets |
| Exon_classlab_matched | Sample Data for coGPS |
| Exon_exprs_matched | Sample Data for coGPS |
| Hs.gmtl.c1 | Sample Data for coGPS |
| Methy_classlab_matched | Sample Data for coGPS |
| Methy_exprs_matched | Sample Data for coGPS |
| PatientSpecificGeneList | Patient Specific outlier gene list |
| PCOPA | P-value based outlier gene detection |
| permCOPA | Calculate PCOPA value for permuations |
| plotCOPA | coGPS package internal function. |
| PlotTopPCOPA | Plot expression patterns of top ranked genes. |