Differentially regulated genes from scRNA-seq data

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Documentation for package ‘DifferentialRegulation’ version 2.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

DifferentialRegulation-package	Differentially regulated genes from scRNA-seq data
compute_PB_counts	Discover differentially regulated genes
DifferentialRegulation	Discover differentially regulated genes from single-cell RNA-seq data
DifferentialRegulation_bulk	Discover differentially regulated genes from bulk RNA-seq data
load_bulk_EC	Create a list containing the equivalence classes objects for the bulk RNA-seq data
load_bulk_US	Creates a SummarizedExperiment containing the estimated US counts for the bulk RNA-seq data
load_EC	Create a list containing the equivalence classes objects for the single-cell RNA-seq data
load_USA	Creates a SingleCellExperiment containing the estimated USA counts for the single-cell RNA-seq data
plot_bulk_pi	Plot the estimated proportions of US counts in each group - bulk RNA-seq data
plot_bulk_traceplot	Traceplot of the posterior chain of the proportion (i.e., pi) of unspliced (U) counts in each group - bulk RNA-seq data
plot_pi	Plot the estimated proportions of US or USA counts in each group - single-cell RNA-seq data
plot_traceplot	Traceplot of the posterior chain of the proportion (i.e., pi) of unspliced (U) counts in each group - single-cell RNA-seq data