Summarization and expression/phenotype association of CNV ranges
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Documentation for package ‘CNVRanger’ version 1.20.0
Help Pages
| cnvEQTL | CNV-expression association analysis |
| cnvGWAS | Run the CNV-GWAS |
| cnvOncoPrint | OncoPrint plot for CNV regions |
| generateGDS | Produce CNV-GDS for the phenotyped samples |
| importLrrBaf | Import LRR and BAF from text files used in the CNV analysis |
| plotEQTL | Plot EQTL region |
| plotManhattan | Manhattan Plot |
| plotRecurrentRegions | Plot recurrent CNV regions |
| populationRanges | Summarizing CNV ranges across a population |
| setupCnvGWAS | Setup the folders and files to run CNV-GWAS analysis |